MVP.Data.Kin: Kinship

In XiaoleiLiuBio/MVP: Memory-Efficient, Visualize-Enhanced, Parallel-Accelerated GWAS Tool

Kinship

Description

Kinship

Usage

MVP.Data.Kin(
  fileKin = TRUE,
  mvp_prefix = "mvp",
  out = NULL,
  maxLine = 10000,
  sep = "\t",
  cpu = 1,
  verbose = TRUE
)

Arguments

fileKin	Kinship that represents relationship among individuals, n * n matrix, n is sample size
mvp_prefix	Prefix for mvp format files
out	prefix of output file name
maxLine	the number of markers handled at a time, smaller value would reduce the memory cost
sep	seperator for Kinship file.
cpu	the number of cpu
verbose	whether to print detail.

Value

Output file: <out>.kin.bin <out>.kin.desc

Examples

geno <- file.path(system.file("extdata", "06_mvp-impute", package = "rMVP"), "mvp.imp")

MVP.Data.Kin(TRUE, mvp_prefix=geno, out=tempfile("outfile"), cpu=1)

XiaoleiLiuBio/MVP documentation built on Sept. 27, 2024, 7:44 a.m.