MVP.Data.Kin: Kinship

In XiaoleiLiuBio/MVP: Memory-Efficient, Visualize-Enhanced, Parallel-Accelerated GWAS Tool

Kinship

Description

Kinship

Usage

MVP.Data.Kin(
  fileKin = TRUE,
  mvp_prefix = "mvp",
  out = NULL,
  priority = "speed",
  sep = "\t",
  cpus = 1,
  verbose = TRUE
)

Arguments

fileKin	Kinship that represents relationship among individuals, n * n matrix, n is sample size
mvp_prefix	Prefix for mvp format files
out	prefix of output file name
priority	"speed" or "memory"
sep	seperator for Kinship file.
cpus	the number of cpu
verbose	whether to print detail.

Value

Output file: <out>.kin.bin <out>.kin.desc

Examples

geno <- file.path(system.file("extdata", "06_mvp-impute", package = "rMVP"), "mvp.imp")

MVP.Data.Kin(TRUE, mvp_prefix=geno, out=tempfile("outfile"), cpus=1)

XiaoleiLiuBio/MVP documentation built on April 11, 2024, 1:20 a.m.