| addHeat | Add heat to the line we want |
| changeFormatChromoMap | Change format for visualization by chromoMap |
| checkDistanceAllReadPair | Check distance requirment on all read pair appeared in... |
| checkDistanceSingleReadPair | Check distance between each parts in one read pair if met the... |
| combineSameRead | Combine reads that only mapping to two parts of chromosome... |
| dupFileter | Select reads that only mapping to two parts of chromosome |
| sizefilter | Filter reads with size requirement |
| sortChrom | Sort reads parts according to their chromosome number |
| visPossiblePair | Visualize possible pairs |
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