combineSameRead: Combine reads that only mapping to two parts of chromosome...
In Yin1012/BreakViz: R Package Template

Description Usage Arguments Value Examples

View source: R/findBreak.R

Combine reads that only mapping to two parts of chromosome and two parts are unique to each other

1	combineSameRead(bedFile, preFiltedRead)

`bedFile`	A bed file after sizeFilter
`preFiltedRead`	A file after sizeFilter and dupFilter

the list of read that only mapping to two parts of chromosome and their information of each part is included

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bedFile2 <- rtracklayer::import(system.file('extdata', 'test_file_2.bed', package = 'BreakViz'), format = 'bed')
dupFiltedBedFile2 <- readRDS(system.file('extdata', 'dupFiltedBedFile2.Rda', package = 'BreakViz'))
combineSameRead(bedFile2, dupFiltedBedFile2)