checkDistanceSingleReadPair: Check distance between each parts in one read pair if met the...
In Yin1012/BreakViz: R Package Template
Description
Usage
Arguments
Value
Examples
Description
Check distance between each parts in one read pair if met the distance requirement
Usage
1
2
3
checkDistanceSingleReadPair(maxDistance, read1part1Start, read1part1Range,
read1part2Start, read1part2Range, read2part1Start, read2part1Range,
read2part2Start, read2part2Range)
Arguments
maxDistance
The distance requirment
read1part1Start
The start position of part1 of read1
read1part2Start
The start position of part2 of read1
read2part1Start
The start position of part1 of read2
read2part2Start
The start position of part2 of read2
read1part1SRange
The range of part1 of read1
read1part2SRange
The range of part2 of read1
read2part1SRange
The range of part1 of read2
read2part2SRange
The range of part2 of read2
Value
The logical value showing if there is a read pair met distance requirment
Examples
1
#'checkDistance(1000,1,10001,10005,300,2000,200,2230,500)
Yin1012/BreakViz documentation built on May 14, 2019, 4:01 a.m.
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Description Usage Arguments Value Examples
Description
Check distance between each parts in one read pair if met the distance requirement
Usage
1 2 3 | checkDistanceSingleReadPair(maxDistance, read1part1Start, read1part1Range,
read1part2Start, read1part2Range, read2part1Start, read2part1Range,
read2part2Start, read2part2Range)
|
Arguments
maxDistance |
The distance requirment |
read1part1Start |
The start position of part1 of read1 |
read1part2Start |
The start position of part2 of read1 |
read2part1Start |
The start position of part1 of read2 |
read2part2Start |
The start position of part2 of read2 |
read1part1SRange |
The range of part1 of read1 |
read1part2SRange |
The range of part2 of read1 |
read2part1SRange |
The range of part1 of read2 |
read2part2SRange |
The range of part2 of read2 |
Value
The logical value showing if there is a read pair met distance requirment
Examples
1 | #'checkDistance(1000,1,10001,10005,300,2000,200,2230,500)
|
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