sortChrom: Sort reads parts according to their chromosome number
In Yin1012/BreakViz: R Package Template
Description
Usage
Arguments
Value
Examples
Description
Sort reads parts according to their chromosome number
Usage
1
sortChrom(lists)
Arguments
lists
A line including read part information of one read with chromosome number
Value
A line whose chromosome number has been ordered.
Examples
1
2
3
4
bedFile2 <- rtracklayer::import(system.file('extdata', 'test_file_2.bed', package = 'BreakViz'), format = 'bed')
dupFiltedBedFile2 <- readRDS(system.file('extdata', 'dupFiltedBedFile2.Rda', package = 'BreakViz'))
lists <- bedFile2[which(bedFile2$name == dupFiltedBedFile2$Var1[1])]
sortChrom(lists)
Yin1012/BreakViz documentation built on May 14, 2019, 4:01 a.m.
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Description Usage Arguments Value Examples
Description
Sort reads parts according to their chromosome number
Usage
1 | sortChrom(lists)
|
Arguments
lists |
A line including read part information of one read with chromosome number |
Value
A line whose chromosome number has been ordered.
Examples
1 2 3 4 | bedFile2 <- rtracklayer::import(system.file('extdata', 'test_file_2.bed', package = 'BreakViz'), format = 'bed')
dupFiltedBedFile2 <- readRDS(system.file('extdata', 'dupFiltedBedFile2.Rda', package = 'BreakViz'))
lists <- bedFile2[which(bedFile2$name == dupFiltedBedFile2$Var1[1])]
sortChrom(lists)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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