visPossiblePair: Visualize possible pairs
In Yin1012/BreakViz: R Package Template
Description
Usage
Arguments
Value
Examples
Description
Visualize possible pairs
Usage
1
2
visPossiblePair(bedfile, minOverlap = 100, maxDistance = 1000,
colorSet = 1)
Arguments
bedfile
A bed file that contains possible pairs for visualization.
minOverlap
A length that a part of one read aligned to chromosomes
maxDistance
A distance that the parts of one pair between each other
Value
A list with possible read pairs
Examples
1
2
bedFile <- import(system.file('extdata', 'test_file_4.bed', package = 'BreakViz'), format = 'bed')
visPossiblePair(bedFile, minOverlap = 100, maxDistance = 1000, 1)
Yin1012/BreakViz documentation built on May 14, 2019, 4:01 a.m.
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Description Usage Arguments Value Examples
Description
Visualize possible pairs
Usage
1 2 | visPossiblePair(bedfile, minOverlap = 100, maxDistance = 1000,
colorSet = 1)
|
Arguments
bedfile |
A bed file that contains possible pairs for visualization. |
minOverlap |
A length that a part of one read aligned to chromosomes |
maxDistance |
A distance that the parts of one pair between each other |
Value
A list with possible read pairs
Examples
1 2 | bedFile <- import(system.file('extdata', 'test_file_4.bed', package = 'BreakViz'), format = 'bed')
visPossiblePair(bedFile, minOverlap = 100, maxDistance = 1000, 1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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