addHeat | Add heat to the line we want |
changeFormatChromoMap | Change format for visualization by chromoMap |
checkDistanceAllReadPair | Check distance requirment on all read pair appeared in... |
checkDistanceSingleReadPair | Check distance between each parts in one read pair if met the... |
combineSameRead | Combine reads that only mapping to two parts of chromosome... |
dupFileter | Select reads that only mapping to two parts of chromosome |
sizefilter | Filter reads with size requirement |
sortChrom | Sort reads parts according to their chromosome number |
visPossiblePair | Visualize possible pairs |
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