sizefilter: Filter reads with size requirement
In Yin1012/BreakViz: R Package Template
Description
Usage
Arguments
Value
Examples
Description
Filter reads with size requirement
Usage
1
sizefilter(bedFile, minOverlap = 1000)
Arguments
bedFile
A bed file
minOverlap
A length that a part of one read aligned to chromosomes
Value
the list of read parts met our size requirment.
Examples
1
2
bedFile1 <- rtracklayer::import(system.file('extdata', 'test_file_1.bed', package = 'BreakViz'))
sizefilter(bedFile1,10)
Yin1012/BreakViz documentation built on May 14, 2019, 4:01 a.m.
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Description Usage Arguments Value Examples
Description
Filter reads with size requirement
Usage
1 | sizefilter(bedFile, minOverlap = 1000)
|
Arguments
bedFile |
A bed file |
minOverlap |
A length that a part of one read aligned to chromosomes |
Value
the list of read parts met our size requirment.
Examples
1 2 | bedFile1 <- rtracklayer::import(system.file('extdata', 'test_file_1.bed', package = 'BreakViz'))
sizefilter(bedFile1,10)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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