PlotTsne: Perform tSNE

In YosefLab/SymSim: Simulate Single Cell RNA Sequencing Data

Perform tSNE

Description

This function takes the ground truth (meta), the expresssion matrix (data), and performs tSNE, saves the result to a jpeg file with user specified name

Usage

PlotTsne(
  meta,
  data,
  evf_type,
  pca = T,
  n_pc,
  perplexity = 30,
  label,
  saving = F,
  plotname,
  system.color = T
)

Arguments

meta:	simulation parameters
data:	expression matrix
plotname:	the name of the jpeg file
label:	the column name of the meta data that the points needs to be colored by

YosefLab/SymSim documentation built on Sept. 30, 2024, 2:22 p.m.