getDEgenes: retrieve genes' differential expression information it...
In YosefLab/SymSim: Simulate Single Cell RNA Sequencing Data
View source: R/summary_functions.R
getDEgenes R Documentation
retrieve genes' differential expression information
it outputs three measures for every gene:
nDiffEVF: the number of DiffEVFs used for each gene
logFC_theoretical: log2 fold change based on kinetic parameters
wil.p_true_counts: adjusted wilcoxon p-value based on true counts
Description
retrieve genes' differential expression information
it outputs three measures for every gene:
nDiffEVF: the number of DiffEVFs used for each gene
logFC_theoretical: log2 fold change based on kinetic parameters
wil.p_true_counts: adjusted wilcoxon p-value based on true counts
Usage
getDEgenes(true_counts_res, popA, popB)
Arguments
true_counts_res
the output of function SimulateTrueCounts()
popA
the first population to be compared with (usually a number)
popB
the second population to be compared with
YosefLab/SymSim documentation built on Sept. 30, 2024, 2:22 p.m.
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View source: R/summary_functions.R
| getDEgenes | R Documentation |
retrieve genes' differential expression information it outputs three measures for every gene: nDiffEVF: the number of DiffEVFs used for each gene logFC_theoretical: log2 fold change based on kinetic parameters wil.p_true_counts: adjusted wilcoxon p-value based on true counts
Description
retrieve genes' differential expression information it outputs three measures for every gene: nDiffEVF: the number of DiffEVFs used for each gene logFC_theoretical: log2 fold change based on kinetic parameters wil.p_true_counts: adjusted wilcoxon p-value based on true counts
Usage
getDEgenes(true_counts_res, popA, popB)
Arguments
true_counts_res |
the output of function SimulateTrueCounts() |
popA |
the first population to be compared with (usually a number) |
popB |
the second population to be compared with |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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