enrichAnnoOverlap: enrichAnnoOverlap

In YuLab-SMU/ChIPseeker: ChIPseeker for ChIP peak Annotation, Comparison, and Visualization

enrichAnnoOverlap

Description

calcuate overlap significant of ChIP experiments based on their nearest gene annotation

Usage

enrichAnnoOverlap(
  queryPeak,
  targetPeak,
  TxDb = NULL,
  pAdjustMethod = "BH",
  chainFile = NULL,
  distanceToTSS_cutoff = NULL
)

Arguments

queryPeak	query bed file
targetPeak	target bed file(s) or folder containing bed files
TxDb	TxDb
pAdjustMethod	pvalue adjustment method
chainFile	chain file for liftOver
distanceToTSS_cutoff	restrict nearest gene annotation by distance cutoff

Value

data.frame

Author(s)

G Yu

YuLab-SMU/ChIPseeker documentation built on Nov. 2, 2024, 1:45 p.m.