plotAvgProf.binning: plotAvgProf.binning

In YuLab-SMU/ChIPseeker: ChIPseeker for ChIP peak Annotation, Comparison, and Visualization

plotAvgProf.binning

Description

plot the profile of peaks by binning

Usage

plotAvgProf.binning(
  tagMatrix,
  xlab = "Genomic Region (5'->3')",
  ylab = "Peak Count Frequency",
  conf,
  facet = "none",
  free_y = TRUE,
  upstream = NULL,
  downstream = NULL,
  label,
  ...
)

Arguments

tagMatrix	tagMatrix or a list of tagMatrix
xlab	x label
ylab	y label
conf	confidence interval
facet	one of 'none', 'row' and 'column'
free_y	if TRUE, y will be scaled
upstream	rel object reflects the percentage of flank extension, e.g rel(0.2) integer reflects the actual length of flank extension or TSS region NULL reflects the gene body with no extension
downstream	rel object reflects the percentage of flank extension, e.g rel(0.2) integer reflects the actual length of flank extension or TSS region NULL reflects the gene body with no extension
label	label
...	additional parameter

Value

ggplot object

YuLab-SMU/ChIPseeker documentation built on Nov. 2, 2024, 1:45 p.m.