getGenomicAnnotation: getGenomicAnnotation

In YuLab-SMU/ChIPseeker: ChIPseeker for ChIP peak Annotation, Comparison, and Visualization

getGenomicAnnotation

Description

get Genomic Annotation of peaks

Usage

getGenomicAnnotation(
  peaks,
  distance,
  tssRegion = c(-3000, 3000),
  TxDb,
  level,
  genomicAnnotationPriority,
  sameStrand = FALSE
)

Arguments

peaks	peaks in GRanges object
distance	distance of peak to TSS
tssRegion	tssRegion, default is -3kb to +3kb
TxDb	TxDb object
level	one of gene or transcript
genomicAnnotationPriority	genomic Annotation Priority
sameStrand	whether annotate gene in same strand

Value

character vector

Author(s)

G Yu

YuLab-SMU/ChIPseeker documentation built on Feb. 11, 2024, 5:22 p.m.