plotAvgProf: plotAvgProf

In YuLab-SMU/ChIPseeker: ChIPseeker for ChIP peak Annotation, Comparison, and Visualization

plotAvgProf

Description

plot the profile of peaks

Usage

plotAvgProf(
  tagMatrix,
  xlim,
  xlab = "Genomic Region (5'->3')",
  ylab = "Peak Count Frequency",
  conf,
  facet = "none",
  free_y = TRUE,
  origin_label = "TSS",
  verbose = TRUE,
  ...
)

Arguments

tagMatrix	tagMatrix or a list of tagMatrix
xlim	xlim
xlab	x label
ylab	y label
conf	confidence interval
facet	one of 'none', 'row' and 'column'
free_y	if TRUE, y will be scaled by AvgProf
origin_label	label of the center
verbose	print message or not
...	additional parameter

Value

ggplot object

Author(s)

G Yu; Y Yan

YuLab-SMU/ChIPseeker documentation built on Feb. 11, 2024, 5:22 p.m.