getNearestFeatureIndicesAndDistances: getNearestFeatureIndicesAndDistances

In YuLab-SMU/ChIPseeker: ChIPseeker for ChIP peak Annotation, Comparison, and Visualization

getNearestFeatureIndicesAndDistances

Description

get index of features that closest to peak and calculate distance

Usage

getNearestFeatureIndicesAndDistances(
  peaks,
  features,
  sameStrand = FALSE,
  ignoreOverlap = FALSE,
  ignoreUpstream = FALSE,
  ignoreDownstream = FALSE,
  overlap = "TSS"
)

Arguments

peaks	peak in GRanges
features	features in GRanges
sameStrand	logical, whether find nearest gene in the same strand
ignoreOverlap	logical, whether ignore overlap of TSS with peak
ignoreUpstream	logical, if True only annotate gene at the 3' of the peak.
ignoreDownstream	logical, if True only annotate gene at the 5' of the peak.
overlap	one of "TSS" or "all"

Value

list

Author(s)

G Yu

YuLab-SMU/ChIPseeker documentation built on Nov. 2, 2024, 1:45 p.m.