API for YuLab-SMU/DOSE
Disease Ontology Semantic and Enrichment analysis
| Global functions | |
|---|---|
| .initial | Source code |
| .onAttach | Source code |
| ALLEXTID | Source code |
| DGN_EXTID2PATHID | Man page |
| DGN_PATHID2EXTID | Man page |
| DGN_PATHID2NAME | Man page |
| DOSE | Man page |
| DOSE-package | Man page |
| DataSet | Man page |
| EXTID2NAME | Man page Source code |
| EXTID2TERMID | Source code |
| GSEA_DOSE | Source code |
| GSEA_fgsea | Source code |
| GSEA_internal | Man page Source code |
| NCG_EXTID2PATHID | Man page |
| NCG_PATHID2EXTID | Man page |
| NCG_PATHID2NAME | Man page |
| TERM2NAME | Source code |
| TERMID2EXTID | Source code |
| VDGN_EXTID2PATHID | Man page |
| VDGN_PATHID2EXTID | Man page |
| VDGN_PATHID2NAME | Man page |
| `$.enrichResult` | Source code |
| `$.gseaResult` | Source code |
| `[.enrichResult` | Source code |
| `[.gseaResult` | Source code |
| `[[.enrichResult` | Source code |
| `[[.gseaResult` | Source code |
| as.data.frame.enrichResult | Source code |
| as.data.frame.gseaResult | Source code |
| build_Anno | Source code |
| calculate_qvalue | Source code Source code |
| check_gene_id | Source code |
| clusterSim | Man page Source code |
| compareClusterResult-class | Man page |
| computeIC | Man page Source code |
| dim.enrichResult | Source code |
| dim.gseaResult | Source code |
| doSim | Man page |
| doseSim | Man page Source code |
| enrichDGN | Man page Source code |
| enrichDGNv | Man page Source code |
| enrichDO | Man page Source code |
| enrichDisease | Source code |
| enrichNCG | Man page Source code |
| enrichResult-class | Man page |
| enricher_internal | Man page Source code |
| facet_grid | Man page |
| gene2DO | Man page Source code |
| geneID | Man page Source code |
| geneID.compareClusterResult | Source code |
| geneID.enrichResult | Source code |
| geneID.gseaResult | Source code |
| geneInCategory | Man page Source code |
| geneInCategory.compareClusterResult | Source code |
| geneInCategory.enrichResult | Source code |
| geneInCategory.gseaResult | Source code |
| geneList | Man page |
| geneSet_filter | Source code |
| geneSim | Man page Source code |
| getGeneSet | Source code |
| get_DGN_data | Source code |
| get_NCG_data | Source code |
| get_VDGN_data | Source code |
| get_anno_data | Source code |
| get_dose_data | Source code |
| get_dose_env | Source code |
| get_enriched | Source code |
| get_gene2allont | Source code |
| get_gene2ont | Source code |
| get_geneSet_index | Source code |
| get_ont2allgene | Source code |
| get_ont2gene | Source code |
| get_organism | Source code |
| gseDGN | Man page Source code |
| gseDO | Man page Source code |
| gseDisease | Source code |
| gseNCG | Man page Source code |
| gseaResult-class | Man page |
| gseaScores | Source code |
| gseahResult-class | Man page |
| gsfilter | Man page Source code |
| head.enrichResult | Source code |
| head.gseaResult | Source code |
| is.sorted | Source code |
| leading_edge | Source code |
| mclusterSim | Man page Source code |
| parse_ratio | Man page Source code |
| perm.geneList | Source code |
| perm.gseaEScore | Source code |
| plot,compareClusterResult-method | Man page |
| print_citation_msg | Source code |
| reexports | Man page |
| semdata | Source code |
| setReadable | Man page Source code |
| show | Man page |
| show,compareClusterResult-method | Man page |
| show,enrichResult-method | Man page |
| show,gseaResult-method | Man page |
| simplot | Man page Source code |
| summary | Man page |
| summary,compareClusterResult-method | Man page |
| summary,enrichResult-method | Man page |
| summary,gseaResult-method | Man page |
| tail.enrichResult | Source code |
| tail.gseaResult | Source code |
| theme_dose | Man page Source code |
