Man pages for YutongWangUMich/corgi
CORGI: Curve-fit Objective Ranking of Gene Importance.
| batch_separation | Compute the batch separation metric |
| combine_sces | Combine several SingleCellExperiment objects |
| corgi | The user friendly version of corgi |
| corgi_select_genes | Select genes |
| dhillon_emb | The embedding as defined in Dhillon, Inderjit S.... |
| get_axes_legend | Empty plot with just the axes and labels |
| get_color_legend | Legend for colors in a scatter plot |
| get_compared_gene_sets | Get compared gene sets |
| get_membership_labels_from_set_list | Convert a list of sets to a membership vector |
| get_scatterplots | Return a list of scatter plots |
| get_shape_legend | Legend for shapes in a scatter plot |
| HDG_ranking | Highly dropped-out gene selection |
| plot_dimensionality_reduction | Wrapper around qplot for making cell scatter plots |
| run_mapping_accuracy_comparison | Run scmap over a range of parameters, over multiple gene sets |
| run_par_fs | The inner loop of corgi |
| run_scmapCell | Wrapper for 'scmap::scmapCell' |
| run_scmapCluster | Wrapper for 'scmap::scmapCluster' |
| sample_cells | Subsample cells random |
| Seurat_CCA_GeneLoading | Wrapper around Seurat's CCA to extract gene loadings |
| spearman_rho_mds | Multidimensional scaling on Spearman rho correlation distance |
| top_n_genes | Return the top genes according to a named vector. |
