batch_separation | Compute the batch separation metric |
combine_sces | Combine several SingleCellExperiment objects |
corgi | The user friendly version of corgi |
corgi_select_genes | Select genes |
dhillon_emb | The embedding as defined in Dhillon, Inderjit S.... |
get_axes_legend | Empty plot with just the axes and labels |
get_color_legend | Legend for colors in a scatter plot |
get_compared_gene_sets | Get compared gene sets |
get_membership_labels_from_set_list | Convert a list of sets to a membership vector |
get_scatterplots | Return a list of scatter plots |
get_shape_legend | Legend for shapes in a scatter plot |
HDG_ranking | Highly dropped-out gene selection |
plot_dimensionality_reduction | Wrapper around qplot for making cell scatter plots |
run_mapping_accuracy_comparison | Run scmap over a range of parameters, over multiple gene sets |
run_par_fs | The inner loop of corgi |
run_scmapCell | Wrapper for 'scmap::scmapCell' |
run_scmapCluster | Wrapper for 'scmap::scmapCluster' |
sample_cells | Subsample cells random |
Seurat_CCA_GeneLoading | Wrapper around Seurat's CCA to extract gene loadings |
spearman_rho_mds | Multidimensional scaling on Spearman rho correlation distance |
top_n_genes | Return the top genes according to a named vector. |
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