Description Usage Arguments Value
The inner loop of corgi
1 2 3 |
X |
gene-by-cell expression matrix for batch 1 |
Y |
gene-by-cell expression matrix for batch 2 |
run_time |
how long to run for |
fs |
a list of scoring functions f(X[F, ], Y[F, ]) -> real number |
must_have_genes |
the set of marker genes that is used in every sampled gene set |
n_genes_sample |
what size gene set to use |
n_cells_X_sample |
how many cells to sample from X |
n_cells_Y_sample |
how many cells to sample from Y |
fs_var |
global variables, to save time |
gene_use |
the set of genes used for sampling |
a list of scores
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