run_par_fs: The inner loop of corgi

Description Usage Arguments Value

View source: R/run_corgi.R

Description

The inner loop of corgi

Usage

1
2
3
run_par_fs(X, Y, run_time, fs, genes_use = NULL, must_have_genes = c(),
  n_genes_sample = NULL, n_cells_X_sample = NULL,
  n_cells_Y_sample = NULL, n_cores_use = NULL)

Arguments

X

gene-by-cell expression matrix for batch 1

Y

gene-by-cell expression matrix for batch 2

run_time

how long to run for

fs

a list of scoring functions f(X[F, ], Y[F, ]) -> real number

must_have_genes

the set of marker genes that is used in every sampled gene set

n_genes_sample

what size gene set to use

n_cells_X_sample

how many cells to sample from X

n_cells_Y_sample

how many cells to sample from Y

fs_var

global variables, to save time

gene_use

the set of genes used for sampling

Value

a list of scores


YutongWangUMich/corgi documentation built on Oct. 26, 2019, 1:13 p.m.