run_scmapCell: Wrapper for 'scmap::scmapCell'

In YutongWangUMich/corgi: CORGI: Curve-fit Objective Ranking of Gene Importance.

Description

Wrapper for scmap::scmapCell

Usage

run_scmapCell(query, ref, gene_set, param, ...)

Arguments

query	the query dataset (SingleCellExperiment object)
ref	the reference dataset (SingleCellExperiment object)
gene_set	a list of characters representing the genes
param	the number of nearest neighbors in scmapCell, an integer
...	additional parameters passed on to caret::confusionMatrix. For example dnn = c("Prediction","Truth").

Value

confusion matrix of the true labels in 'ref' and the 'scmapCluster' predicted labels

YutongWangUMich/corgi documentation built on Oct. 26, 2019, 1:13 p.m.