run_scmapCluster: Wrapper for 'scmap::scmapCluster'
In YutongWangUMich/corgi: CORGI: Curve-fit Objective Ranking of Gene Importance.
Description
Usage
Arguments
Value
Description
Wrapper for scmap::scmapCluster
Usage
1
run_scmapCluster(query, ref, gene_set, param, ...)
Arguments
query
the query dataset (SingleCellExperiment object)
ref
the reference dataset (SingleCellExperiment object)
gene_set
a list of characters representing the genes
...
additional parameters passed on to caret::confusionMatrix. For example dnn = c("Prediction","Truth").
threshold
the threshold parameter used in scmapCluster, between 0 and 1
Value
confusion matrix of the true labels in 'ref' and the 'scmapCluster' predicted labels
YutongWangUMich/corgi documentation built on Oct. 26, 2019, 1:13 p.m.
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Description Usage Arguments Value
Description
Wrapper for scmap::scmapCluster
Usage
1 | run_scmapCluster(query, ref, gene_set, param, ...)
|
Arguments
query |
the query dataset (SingleCellExperiment object) |
ref |
the reference dataset (SingleCellExperiment object) |
gene_set |
a list of characters representing the genes |
... |
additional parameters passed on to |
threshold |
the threshold parameter used in scmapCluster, between 0 and 1 |
Value
confusion matrix of the true labels in 'ref' and the 'scmapCluster' predicted labels
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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