Tool.GenPermutation: Generate Permutations of Count Matrix

In ZJUDBlab/InterCellDB: Tool and Database for Analyzing Interactions

Generate Permutations of Count Matrix

Description

This function uses cell label permutation to generate one list of normalized count matrix.

Usage

Tool.GenPermutation(
  object,
  count.matrix,
  cells.meta = NULL,
  genes.name = NULL,
  perm.times = 1000,
  p.seed = 101
)

Arguments

object	A InterCell object.
count.matrix	Normalized count matrix, with columns as cell barcodes and rows as gene names.
cells.meta	cell group labels, which are used to group cells in several groups rather all different barcodes.
genes.name	Readable gene names, which should be the same set as genes given in DEG.table. To be noted, if genes are remapped when created InterCell object, it will be automatically applied to this.
perm.times	Permutation times. Default is set to 1000.
p.seed	Seed for generating permutations.

ZJUDBlab/InterCellDB documentation built on March 19, 2023, 4:56 p.m.