pairs.human.db: Experiments database of interaction pairs of human genes

In ZJUDBlab/InterCellDB: Tool and Database for Analyzing Interactions

Experiments database of interaction pairs of human genes

Description

A dataset contains the all-from-STRING interaction pairs of human genes. In this package, it has 5758309 unique pairs in total.

Usage

pairs.human.db

Format

Data.frame.

• inter.GeneID.*: the unique geneID for every gene in NCBI gene database.

• inter.GeneName.*: the authorized name for every gene in NCBI gene database.

• inter.Experiments.Score: score by experiments, which is the <experiments> score in STRING database.

• inter.Database.Score: score by curated database, which is the <database> score in STRING database.

• inter.Predicted.Score: score by prediction, which is the columns other than <experiments> and <database.>, e.g. gene fusion, gene neighbor, etc.

• inter.Combined.Score: score combing all above scores.

Details

The subset of STRING data used are <taxonomy = Homo Sapiens>.

Source

STRING <https://string-db.org>.

ZJUDBlab/InterCellDB documentation built on March 19, 2023, 4:56 p.m.