Files in ZJUFanLab/SpaTalk
Infer Cell-Cell Communication for Spatial Transcriptomics
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE.md
NAMESPACE
R/class.R
R/demo.R
R/methods.R
R/plot.R
R/rev_gene.R
R/sysdata.R
R/utils.R
README.md
SpaTalk.Rproj
data/geneinfo.rda
data/lrpairs.rda
data/pathways.rda
img/SpaTalk.png
img/cor_heatmap.png
img/plot_cci_lrpairs.png
img/plot_cci_lrpairs_num.png
img/plot_lr_path.png
img/plot_lrpair.png
img/plot_lrpair_vln.png
img/plot_path2gene.png
img/st_celltype.png
img/st_celltype_all.png
img/st_celltype_density.png
img/st_celltype_percent.png
img/st_celltype_raster.png
img/st_gene_cell.png
img/st_gene_spot.png
img/st_pie.png
inst/CITATION
inst/extdata/starmap_data.rda
inst/extdata/starmap_meta.rda
man/SpaTalk.Rd
man/createSpaTalk.Rd
man/dec_cci.Rd
man/dec_cci_all.Rd
man/dec_celltype.Rd
man/demo_dec_result.Rd
man/demo_geneinfo.Rd
man/demo_lrpairs.Rd
man/demo_pathways.Rd
man/demo_sc_data.Rd
man/demo_st_data.Rd
man/demo_st_meta.Rd
man/demo_st_sc_data.Rd
man/demo_st_sc_meta.Rd
man/find_lr_path.Rd
man/geneinfo.Rd
man/generate_spot.Rd
man/get_lr_path.Rd
man/lrpairs.Rd
man/pathways.Rd
man/plot_ccdist.Rd
man/plot_cci_lrpairs.Rd
man/plot_lr_path.Rd
man/plot_lrpair.Rd
man/plot_lrpair_vln.Rd
man/plot_path2gene.Rd
man/plot_st_celltype.Rd
man/plot_st_celltype_all.Rd
man/plot_st_celltype_density.Rd
man/plot_st_celltype_percent.Rd
man/plot_st_cor_heatmap.Rd
man/plot_st_gene.Rd
man/plot_st_pie.Rd
man/plot_st_pie_generate.Rd
man/rev_gene.Rd
man/set_expected_cell.Rd
man/show-SpaTalk-method.Rd
script/cellcall.R
script/cellchat.R
script/cellphonedb.sh
script/cytotalk.R
script/giotto.R
script/max_hop.R
script/nichenetr.R
script/spaotsc.sh
script/starmap.R
vignettes/.gitignore
vignettes/SpaTalk.pdf
