R/sysdata.R

In ZJUFanLab/SpaTalk: Infer Cell-Cell Communication for Spatial Transcriptomics

#' geneinfo
#'
#' Gene symbols of \code{'Human'} and \code{'Mouse'} updated on June 30, 2021 for revising count matrix.
#' @source \url{https://www.ncbi.nlm.nih.gov/gene}
"geneinfo"

#' lrpairs
#'
#' Ligand-receptor pairs of \code{'Human'} and \code{'Mouse'} containing 3398 human and 2033 mouse pairs.
#' @source \url{http://tcm.zju.edu.cn/celltalkdb/}
"lrpairs"

#' pathways
#'
#' KEGG pathways and Reactomes of \code{'Human'} and \code{'Mouse'} for intra-cellular genes and transcription factors.
#' @source \url{https://www.genome.jp/kegg/pathway.html}
#' @source \url{https://reactome.org/}
#' @source \url{http://bioinfo.life.hust.edu.cn/AnimalTFDB/#!/}
"pathways"