API for abruyneel/AlleleProfileR
Genome editing strategy agnostic variant identification and profiling tool
| Global functions | |
|---|---|
| AlleleProfileR | Man page |
| AlleleProfileR-package | Man page |
| AlleleProfileR.alternatereference | Man page Source code |
| AlleleProfileR.bam | Man page Source code |
| AlleleProfileR.batch | Man page Source code |
| AlleleProfileR.batch.recompute | Man page Source code |
| AlleleProfileR.batch.summary | Man page Source code |
| AlleleProfileR.binreads | Man page Source code |
| AlleleProfileR.cryptic | Man page Source code |
| AlleleProfileR.determine.variants | Man page Source code |
| AlleleProfileR.execute | Man page Source code |
| AlleleProfileR.getcodingseq | Source code |
| AlleleProfileR.getreads | Man page Source code |
| AlleleProfileR.labelwrapper | Source code |
| AlleleProfileR.map | Man page Source code |
| AlleleProfileR.merge | Man page Source code |
| AlleleProfileR.parsecodingframe | Man page Source code |
| AlleleProfileR.parseleadseq | Man page Source code |
| AlleleProfileR.parsetrailseq | Man page Source code |
| AlleleProfileR.plot | Man page Source code |
| AlleleProfileR.plot.alignment | Man page Source code |
| AlleleProfileR.plot.mutationtypes | Man page Source code |
| AlleleProfileR.plot.readdept | Man page Source code |
| AlleleProfileR.plot.seqlogo | Man page Source code |
| AlleleProfileR.preprocess | Man page Source code |
| AlleleProfileR.processWT | Source code |
| AlleleProfileR.qc | Man page Source code |
| AlleleProfileR.qc.simple | Man page Source code |
| AlleleProfileR.read.folders | Man page Source code |
| AlleleProfileR.sample.distribution | Man page Source code |
| AlleleProfileR.sample.distribution.boolean | Man page Source code |
| AlleleProfileR.setup | Man page Source code |
| AlleleProfileR.simulate | Man page Source code |
| AlleleProfileR.summary.profiled.alleles | Man page Source code |
| bamQCC | Source code |
| binassignC | Source code |
| binassignChimericC | Source code |
| checkatgC | Source code |
| checknegC | Source code |
| checkstopC | Source code |
| cigarsubsC | Source code |
| cigarsubsSHC | Source code |
| cigarsubsdeletionsC | Source code |
| cigarsubsinsertionsC | Source code |
| cigarsubstail | Source code |
| codonsC | Source code |
| codonselectC | Source code |
| generalpastelongC | Source code |
| getreferenceC | Source code |
| inssitesC | Source code |
| iswithincdsC | Source code |
| iswithincutrangeC | Source code |
| iswithininsertionC | Source code |
| mathandC | Source code |
| mathintersectC | Source code |
| mathorC | Source code |
| mathrangeC | Source code |
| mergedSanityCheckC | Source code |
| mutreferenceC | Source code |
| readdeptc | Source code |
| readposendC | Source code |
| seglogoC | Source code |
| seqinsertedC | Source code |
| snpsC | Source code |
| variantnameC | Source code |
