AlleleProfileR.sample.distribution.boolean: Allelelic variant distribution summary and plotting function...

In abruyneel/AlleleProfileR: Genome editing strategy agnostic variant identification and profiling tool

Description

This function determines summary statistics and plots heatmaps of the allelic variants.

Usage

AlleleProfileR.sample.distribution.boolean(pipe_config, sample.id = NA,
  gene.id = NA, plot = TRUE, plotparam = c("wt", "fs", "snp", "atg",
  "coding", "stop", "pstop", "sm", "lg", "utr", "cryptic", "error"),
  alternate = NULL, title = TRUE, axis.text.size = 8,
  legend.text.size = 6, display_other = T, ylabels = TRUE,
  order = NULL)

Arguments

pipe_config	congifuration object
sample.id	Sample id, from samples object.
gene.id	Gene id, from genes table.
plot	Plot results?
plotparam	names of the parameters to plot
alternate	Alternate reference for labeling the HDR variant, as defined by AlleleProfileR.alternatereference.
title	If TRUE, a title will be included in the graph.
axis.text.size	The size of the axis labels. Default is 8.
legend.text.size	The size of the legend labels. Default is 6.
display_other	Display the 'other' allele. Default is TRUE.
ylabels	Print ylabels. Default is TRUE.
order	ordering variable

Value

Table and/or plot.

Author(s)

Arne Bruyneel

abruyneel/AlleleProfileR documentation built on June 12, 2020, 2:47 p.m.