AlleleProfileR.alternatereference: Determine the allele name of HDR sequences
In abruyneel/AlleleProfileR: Genome editing strategy agnostic variant identification and profiling tool
Description
Usage
Arguments
Value
Author(s)
View source: R/functions_main.R
Description
This function determines the name of the variant that would be introduced if homologous recombination with the template were to occur.
Usage
1
AlleleProfileR.alternatereference(config, alternate, overwrite = T)
Arguments
config
Configuration list, as generated by AlleleProfileR.setup.
alternate
Path to .fasta file with HDR sequences
overwrite
overwrite existing alternate.bam file
Value
Data.frame with the HDR variant names for each gene in the gene table.
Author(s)
Arne Bruyneel
abruyneel/AlleleProfileR documentation built on June 12, 2020, 2:47 p.m.
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Description Usage Arguments Value Author(s)
View source: R/functions_main.R
Description
This function determines the name of the variant that would be introduced if homologous recombination with the template were to occur.
Usage
1 | AlleleProfileR.alternatereference(config, alternate, overwrite = T)
|
Arguments
config |
Configuration list, as generated by AlleleProfileR.setup. |
alternate |
Path to .fasta file with HDR sequences |
overwrite |
overwrite existing alternate.bam file |
Value
Data.frame with the HDR variant names for each gene in the gene table.
Author(s)
Arne Bruyneel
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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