AlleleProfileR.sample.distribution: Allelelic variant distribution summary and plotting function

In abruyneel/AlleleProfileR: Genome editing strategy agnostic variant identification and profiling tool

Description

This function determines summary statistics and plots barcharts of the allelic variants, for either coding sequence length or read counts.

Usage

AlleleProfileR.sample.distribution(pipe_config, sample.id = NA,
  gene.id = NA, plot = TRUE, plotparam = 1, alternate = NULL,
  title = TRUE, axis.text.size = 8, legend.text.size = 6,
  display_other = TRUE, ylabels = TRUE, order = NULL,
  emptyrow = TRUE, addwt = TRUE)

Arguments

pipe_config	congifuration object
sample.id	Sample id, from samples object.
gene.id	Gene id, from genes table.
plot	Plot results?
plotparam	If 1, the coding frame length will be plotted. If 2, the read count will be plotted. If 3, read proportion will be plotted.
alternate	Alternate reference for labeling the HDR variant, as defined by AlleleProfileR.alternatereference.
title	If TRUE, a title will be included in the graph.
axis.text.size	The size of the axis labels. Default is 8.
legend.text.size	The size of the legend labels. Default is 6.
display_other	Display the 'other' allele. Default is TRUE.
ylabels	Print ylabels. Default is TRUE.
order	ordering variable
emptyrow	Add emptyrow bool. Default is TRUE.
addwt	Add addwt bool. Default is TRUE.

Value

Table and/or plot.

Author(s)

Arne Bruyneel

abruyneel/AlleleProfileR documentation built on June 12, 2020, 2:47 p.m.