AlleleProfileR.qc.simple: Basic QC function for BAM data.frames
In abruyneel/AlleleProfileR: Genome editing strategy agnostic variant identification and profiling tool
Description
Usage
Arguments
Value
Author(s)
View source: R/functions_main.R
Description
This function will discard low qual reads based on the flags. However, note that this function only employs really basic filtering. More advanced read filtering or preprocessing may be required and can be accomplished using AlleleProfileR.preprocess and external software.
Usage
1
AlleleProfileR.qc.simple(bamtable)
Arguments
bamtable
Data.frame containing the reads, as generated by AlleleProfileR.bam.
Value
bam data.frame
Author(s)
Arne Bruyneel
abruyneel/AlleleProfileR documentation built on June 12, 2020, 2:47 p.m.
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Description Usage Arguments Value Author(s)
View source: R/functions_main.R
Description
This function will discard low qual reads based on the flags. However, note that this function only employs really basic filtering. More advanced read filtering or preprocessing may be required and can be accomplished using AlleleProfileR.preprocess and external software.
Usage
1 | AlleleProfileR.qc.simple(bamtable)
|
Arguments
bamtable |
Data.frame containing the reads, as generated by AlleleProfileR.bam. |
Value
bam data.frame
Author(s)
Arne Bruyneel
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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