AlleleProfileR.batch: Start the analysis pipeline

In abruyneel/AlleleProfileR: Genome editing strategy agnostic variant identification and profiling tool

Description

This is the main function for processing the sequencing data to determine genetic variants.

Usage

AlleleProfileR.batch(config, cores = 1, subset = NULL,
  summarize = TRUE)

Arguments

config	Configuration list, as generated by AlleleProfileR.setup.
cores	Number of CPU cores to be used for processing.
subset	List of the IDs of samples table and the IDs of the genes of interest in the genes table. If set to NULL, all samples will be analysed for all genes. Default is NULL.
summarize	Generate ummary tables and exported as .csv files. Default is TRUE.

Value

This function does not return anything. All results are written to .csv files in the output folder.

Author(s)

Arne Bruyneel

abruyneel/AlleleProfileR documentation built on June 12, 2020, 2:47 p.m.