AlleleProfileR.batch.recompute: Recompute summary output files

In abruyneel/AlleleProfileR: Genome editing strategy agnostic variant identification and profiling tool

Description

This function will recompute summary output files with defined cut-off value to exclude infrequent variants.

Usage

AlleleProfileR.batch.recompute(config, cutoff = 0, ignore.single = F,
  top = 0, subset = NULL)

Arguments

config	Configuration list, as generated by AlleleProfileR.setup.
cutoff	Percent value (0 to 1), representing the treshold read count for a certain allelic variant to be included in further analysis.
ignore.single	Ingore alleles representing a single read pair? Default is FALSE.
top	Only report the top x variants
subset	List of the IDs of samples table and the IDs of the genes of interest in the genes table. If set to NULL, all samples will be analysed for all genes. Default is NULL.

Value

This function does not return anything. All results are written to .csv files in the output folder.

Author(s)

Arne Bruyneel

abruyneel/AlleleProfileR documentation built on June 12, 2020, 2:47 p.m.