AlleleProfileR.plot.seqlogo: Seqlogo plot function

In abruyneel/AlleleProfileR: Genome editing strategy agnostic variant identification and profiling tool

Description

Plot the efficacy of base-editing as a sequence logo.

Usage

AlleleProfileR.plot.seqlogo(config, sample.id = NA, gene.id = NA,
  customrange = c(NA, NA), plot = F, axis.text.size = 8)

Arguments

config	Configuration list, as generated by AlleleProfileR.setup.
sample.id	Sample id, from samples object.
gene.id	Gene id, from genes table.
customrange	Vector with start and stop position of the region to be analyzed/plotted.
plot	Plot results?
axis.text.size	The size of the axis labels. Default is 8.

Value

plot ggseqlogo

Author(s)

Arne Bruyneel

References

• Wagih, O. ggseqlogo: a versatile R package for drawing sequence logos. Bioinformatics 2017;33(22):3645-3647.

abruyneel/AlleleProfileR documentation built on June 12, 2020, 2:47 p.m.