AlleleProfileR.batch.summary: Summary function

In abruyneel/AlleleProfileR: Genome editing strategy agnostic variant identification and profiling tool

Description

This function determines and plots the relative occurence of boolean features for all samples and all genes.

Usage

AlleleProfileR.batch.summary(config, table = F, plot = T,
  param = "wt", subset = NULL)

Arguments

config	Configuration list, as generated by AlleleProfileR.setup.
table	Sumarized the results as a table?
plot	Plot results?
param	Parameter to plot. Default is wt.
subset	List of the IDs of samples table and the IDs of the genes of interest in the genes table. If set to NULL, all samples will be analysed for all genes. Default is NULL.

Value

Summary table and/or heat map. The color of the heat map represents proportion, whereas the tile label indicates total number of alleles.

Author(s)

Arne Bruyneel

abruyneel/AlleleProfileR documentation built on June 12, 2020, 2:47 p.m.