tests/testthat/test-importPairwiseContrasts.R

In acidgenomics/DESeqAnalysis: Acid Genomics DESeq2 Analysis Utilities

test_that("importPairwiseContrasts", {
    file <- system.file("extdata/contrasts.csv", package = "DESeqAnalysis")
    object <- importPairwiseContrasts(file)
    expected <- list(
        dox_induction_control = c(
            "group" = "group",
            "numerator" = "B",
            "denominator" = "A"
        ),
        effect_of_wt_protein_induction_vs_ev_line = c(
            "group" = "group",
            "numerator" = "C",
            "denominator" = "B"
        )
    )
    expect_identical(object, expected)
})