PFPRefnet-class: 'PFPRefnet-class'

In aib-group/PFP: Pathway Fingerprint Framework in R

Description

An S4 object for storing PFP reference network information.

Value

a object of PFPRefnet class

Slots

network,

object of graphNEL list represents the basic networks.

net_info,

a dataframe which contains the index, id, name, group and species.It contains the information of the pathway networks, whose row number is the same with network.

#'@section method:

• network, signature(object = "PFPRefnet"): extract networks of PFPRefnet

• net_info, signature(object = "PFPRefnet"): extract net information of PFPRefnet

• group, signature(object = "PFPRefnet"): extract group information

• net_names, signature(object = "PFPRefnet"): the names of basic networks

• subnet, signature(object = "PFPRefnet"): subset basic networks, e.g. a group of a networks or some networks of some given groups

• show_net, signature(object = "PFPRefnet"): display methods for S4 classes PFPRefnet, see also show_net

See Also

network-methods, net_info-methods, group-methods, net_names-methods, subnet-methods, show_net-methods,

Examples

data(PFPRefnet_hsa)
PFPRefnet_hsa

aib-group/PFP documentation built on Dec. 27, 2020, 1:13 a.m.