trans_xml2graph: translate kgml files to graphNEl
In aib-group/PFP: Pathway Fingerprint Framework in R
Description
Usage
Arguments
Details
Value
Examples
View source: R/load_kegg_graphs.R
Description
This function will translate all kegg KGML files in path
file_dir.
Usage
1
trans_xml2graph(file_dir, test_mode = FALSE)
Arguments
file_dir,
a character, refers to the file_path where kegg KGML files
are stored.
test_mode,
please set whether to test this function.
Details
transform all KEGG KGML files downloaded by the function
kegg_download() in path file_dir to the graphNEL object
Value
a list of graphNEL
Examples
1
trans_xml2graph(file_dir, test=TRUE)
aib-group/PFP documentation built on Dec. 27, 2020, 1:13 a.m.
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Description Usage Arguments Details Value Examples
View source: R/load_kegg_graphs.R
Description
This function will translate all kegg KGML files in path
file_dir.
Usage
1 | trans_xml2graph(file_dir, test_mode = FALSE)
|
Arguments
file_dir, |
a character, refers to the file_path where kegg KGML files are stored. |
test_mode, |
please set whether to test this function. |
Details
transform all KEGG KGML files downloaded by the function
kegg_download() in path file_dir to the graphNEL object
Value
a list of graphNEL
Examples
1 | trans_xml2graph(file_dir, test=TRUE)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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