kegg_download: download kegg KGML files
In aib-group/PFP: Pathway Fingerprint Framework in R
Description
Usage
Arguments
Details
Value
Examples
View source: R/load_kegg_graphs.R
Description
This function will download all kegg KGML files assigned by
spec.
Usage
1
kegg_download(spec, file_root = ".", test_mode = FALSE)
Arguments
spec,
a character, refers to the species names in kegg, such as "hsa",
"mmu"...
file_root,
a character,refers to the root you want to save kegg
pathway kgml files in.
test_mode,
please set whether to test this function.
Details
Downloading all kegg KGML files assigned by spec from
https://www.kegg.jp/kegg/xml/,
which may take tens of minutes.
Value
the kegg KGML files
Examples
1
kegg_download(spec,file_root=".", test_mode=TRUE)
aib-group/PFP documentation built on Dec. 27, 2020, 1:13 a.m.
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Description Usage Arguments Details Value Examples
View source: R/load_kegg_graphs.R
Description
This function will download all kegg KGML files assigned by
spec.
Usage
1 | kegg_download(spec, file_root = ".", test_mode = FALSE)
|
Arguments
spec, |
a character, refers to the species names in kegg, such as "hsa", "mmu"... |
file_root, |
a character,refers to the root you want to save kegg pathway kgml files in. |
test_mode, |
please set whether to test this function. |
Details
Downloading all kegg KGML files assigned by spec from
https://www.kegg.jp/kegg/xml/,
which may take tens of minutes.
Value
the kegg KGML files
Examples
1 | kegg_download(spec,file_root=".", test_mode=TRUE)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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