Files in aib-group/PFP
Pathway Fingerprint Framework in R
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
NEWS.md
R/PFP-class.R
R/PFP.R
R/PFPRefnet-class.R
R/calc_PFP_score.R
R/datalist.R
R/load_kegg_graphs.R
R/net.R
R/plot_PFPlist.R
README.md
data/PFPRefnet_hsa.RData
data/PFPRefnet_mmu.RData
data/PFP_test1.RData
data/PFP_test2.RData
data/data_std.RData
data/gene_list_hsa.RData
data/pathway_info.RData
data/pathway_info_hsa.RData
man/PFP-class.Rd
man/PFP.Rd
man/PFPRefnet-class.Rd
man/PFPRefnet_hsa.Rd
man/PFPRefnet_mmu.Rd
man/PFP_score-methods.Rd
man/PFP_test1.Rd
man/PFP_test2.Rd
man/calc_PFP_score.Rd
man/data_std.Rd
man/gene_list_hsa.Rd
man/genes_score-methods.Rd
man/get_PFPRefnet.Rd
man/get_asso_net.Rd
man/get_bg_related_kegg.Rd
man/get_exp_cor_edges.Rd
man/get_pathway_info.Rd
man/group-methods.Rd
man/kegg_download.Rd
man/net_info-methods.Rd
man/net_names-methods.Rd
man/network-methods.Rd
man/pathway_info.Rd
man/pathway_info_hsa.Rd
man/pathways_score-methods.Rd
man/plot_PFP-methods.Rd
man/plot_PFPlist.Rd
man/rank_PFP-methods.Rd
man/refnet_info-methods.Rd
man/refnet_names-methods.Rd
man/result_PFP-methods.Rd
man/show_PFP-methods.Rd
man/show_net-methods.Rd
man/stats_test-methods.Rd
man/sub_PFP-methods.Rd
man/subnet-methods.Rd
man/trans_edges_id.Rd
man/trans_graph2PFPRefnet.Rd
man/trans_xml2graph.Rd
tests/testthat.R
tests/testthat/test-PFP.R
tests/testthat/test-PFPRefnet.R
vignettes/PFP.Rmd
