result_PFP-methods: result of the PFP object.
In aib-group/PFP: Pathway Fingerprint Framework in R
Description
Usage
Arguments
Value
See Also
Examples
Description
get the result of the PFP object.
Usage
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result_PFP(object, thresh_slot = NULL, thresh_value = 0.05)
## S4 method for signature 'PFP'
result_PFP(object, thresh_slot = NULL, thresh_value = 0.05)
Arguments
object,
PFP class
thresh_slot,
a character, it could be 'p_value' or 'p_adj_value',
it means the threshold slot to choose for select the significant pathway.
Default is NULL,it means that you don't
want to select the significant pathway and you will select all pathways.
thresh_value,
a numeric, threshold value of 'p_value' or
'p_adjust_value' for pathway selection,Default is 0.05.
Value
the scores and the information of PFP object.
See Also
Examples
1
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data(PFP_test1)
result_PFP(PFP_test1,
thresh_slot="p_adj_value",
thresh_value = 0.05)
aib-group/PFP documentation built on Dec. 27, 2020, 1:13 a.m.
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Description Usage Arguments Value See Also Examples
Description
get the result of the PFP object.
Usage
1 2 3 4 | result_PFP(object, thresh_slot = NULL, thresh_value = 0.05)
## S4 method for signature 'PFP'
result_PFP(object, thresh_slot = NULL, thresh_value = 0.05)
|
Arguments
object, |
|
thresh_slot, |
a character, it could be 'p_value' or 'p_adj_value', it means the threshold slot to choose for select the significant pathway. Default is NULL,it means that you don't want to select the significant pathway and you will select all pathways. |
thresh_value, |
a numeric, threshold value of 'p_value' or 'p_adjust_value' for pathway selection,Default is 0.05. |
Value
the scores and the information of PFP object.
See Also
Examples
1 2 3 4 | data(PFP_test1)
result_PFP(PFP_test1,
thresh_slot="p_adj_value",
thresh_value = 0.05)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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