sub_PFP-methods: subset of PFP object

In aib-group/PFP: Pathway Fingerprint Framework in R

Description

This function extract the subsets of PFP-class.

Usage

sub_PFP(
  object,
  group_name = NULL,
  index = NULL,
  index_type = c("slice", "pathway_id", "pathway_name")
)

## S4 method for signature 'PFP'
sub_PFP(
  object,
  group_name = NULL,
  index = NULL,
  index_type = c("slice", "pathway_id", "pathway_name")
)

Arguments

object,	PFP class
group_name,	the group name in kegg
index,	the index of pathway, NULL or a list contains slice/numeric, character, specifying elements to extract. This parameter' length must be the same as group_name. Default is NULL, indicating extract all the networks of a group. See details for more information.
index_type,	the index type,such as "slice","pathway_id","pathway_name"

Details

This function help users to extract the specific networks PFPscores for customized analysis, which could be of entire group PFP or some part of a specific group PFP.

Note, the index argument is only worked while the group_name argument is consideration, which means group_name is not NULL. And the length must be the same as group_name. Default is NULL, indicating extract the entire PFP.

Value

a PFP object contains just the selected elements.

See Also

PFP-class

Examples

data(PFP_test1)
PFP_test1

aib-group/PFP documentation built on Dec. 27, 2020, 1:13 a.m.