Man pages for aiminy/ChipSeq
An R Package for Performing ChipSeq Analysis In One Step
| AnnotatePeak2 | AnnotatePeak2 |
| AnnotatePeak3 | AnnotatePeak3 |
| AnntationUsingChipSeeker | AnntationUsingChipSeeker |
| BamFileSortIndexVisualization | BamFileSortIndexVisualization |
| DrawVenn | DrawVenn |
| getGeneBedName | ChipSeq:::getGeneBedName("/Volumes/Bioinformatics$/2017/DannyNewData/NewRe2Danny","peaks.csv","/Volumes/Bioinformatics$/2017/DannyNewData/NewRe2Danny") |
| GetResultsFromDiffBind | GetResultsFromDiffBind Use DiffBind to process peak profiles |
| GetSampleInfo | GetSampleInfo |
| IndexBamFile | IndexBamFile |
| InstallRequiredPackage | InstallRequiredPackage |
| LoadRequiredPackage | Title |
| matchBamInputGene | input.sample.file <-... |
| parser4diffbind | parser4diffbind |
| ParserBamFile4NgsPlot | ParserBamFile4NgsPlot |
| ParserBedFile | Title |
| ParserBedFile4Peng | ParserBedFile4Peng |
| ParserBedFile4PengVenn | ParserBedFile4PengVenn |
| ParserBedFile4PengXls | ParserBedFile4PengXls |
| ParserReadFiles | ParserReadFiles |
| PeakCallAndAnnotation | PeakCallAndAnnotation |
| peakcallwithinput | peakcallwithinput |
| plotBam | R -e... |
| plotBam2 | plotBam2 |
| ProcessUsingCHIPpeakAnno | ProcessUsingCHIPpeakAnno |
| reformatPath | Title |
| runPlotBam2 | R -e... |
| useBamCompare | bsub -P bbc -J "bamCompare" -o... |
| useHOMER | useHOMER |
| usePegasus | x <- ChipSeq:::usePegasus('parallel', Wall.time =... |
