Man pages for aiminy/ChipSeq
An R Package for Performing ChipSeq Analysis In One Step

AnnotatePeak2AnnotatePeak2
AnnotatePeak3AnnotatePeak3
AnntationUsingChipSeekerAnntationUsingChipSeeker
BamFileSortIndexVisualizationBamFileSortIndexVisualization
DrawVennDrawVenn
getGeneBedNameChipSeq:::getGeneBedName("/Volumes/Bioinformatics$/2017/DannyNewData/NewRe2Danny","peaks.csv","/Volumes/Bioinformatics$/2017/DannyNewData/NewRe2Danny")
GetResultsFromDiffBindGetResultsFromDiffBind Use DiffBind to process peak profiles
GetSampleInfoGetSampleInfo
IndexBamFileIndexBamFile
InstallRequiredPackageInstallRequiredPackage
LoadRequiredPackageTitle
matchBamInputGeneinput.sample.file <-...
parser4diffbindparser4diffbind
ParserBamFile4NgsPlotParserBamFile4NgsPlot
ParserBedFileTitle
ParserBedFile4PengParserBedFile4Peng
ParserBedFile4PengVennParserBedFile4PengVenn
ParserBedFile4PengXlsParserBedFile4PengXls
ParserReadFilesParserReadFiles
PeakCallAndAnnotationPeakCallAndAnnotation
peakcallwithinputpeakcallwithinput
plotBamR -e...
plotBam2plotBam2
ProcessUsingCHIPpeakAnnoProcessUsingCHIPpeakAnno
reformatPathTitle
runPlotBam2R -e...
useBamComparebsub -P bbc -J "bamCompare" -o...
useHOMERuseHOMER
usePegasusx <- ChipSeq:::usePegasus('parallel', Wall.time =...
aiminy/ChipSeq documentation built on Nov. 8, 2017, 4:21 a.m.