parser4diffbind: parser4diffbind

In aiminy/ChipSeq: An R Package for Performing ChipSeq Analysis In One Step

Description

parser4diffbind

Usage

parser4diffbind(input.sample.file, input.bed.dir, input.file.pattern,
  output.dir, summit_peak = NULL)

Arguments

input.file.pattern

Examples

 
input.sample.file = "/Volumes/Bioinformatics$/2017/DannyNewData/SampleID_INFO_ChIP_new_Danny.csv"
input.bed.dir = "/Volumes/Bioinformatics$/2017/DannyNewData/PeakCall/"
input.file.pattern = "bed"
output.dir="BindDiff_4_7_2017-cutoff_10k_test"
resmcf<-parser4diffbind(input.sample.file,input.bed.dir,input.file.pattern,output.dir)

aiminy/ChipSeq documentation built on May 12, 2019, 3:37 a.m.