Files in aiminy/ChipSeq
An R Package for Performing ChipSeq Analysis In One Step
.travis.yml
DESCRIPTION
NAMESPACE
R/ChipSeq.R
README.md
data/mcf7.RData
inst/bin/BashRun.sh
inst/bin/ChipSeq_old.R
inst/bin/Process_Bam.r
inst/bin/Run_Chip_Seq.r
inst/bin/Run_Chip_Seq_interactive_model.r
inst/bin/Run_Merge_peak.r
inst/bin/Set_up_R.r
inst/bin/UseInputCall.r
inst/bin/Visualization.r
inst/bin/bedClip
inst/bin/bedGraphToBigWig
inst/bin/wigCorrelate
inst/data/suppl_data/SuppTable_diffPeakTools_description.xls
inst/data/suppl_data/suppFigure1_H3K27ac_peakNumer_peakLength.jpg
inst/data/suppl_data/suppFigure2_FoxA1_simulationScreen.jpg
inst/data/suppl_data/suppFigure3_H3K36me3_simulationScreen.jpg
inst/data/suppl_data/suppFigure4_diffGeneRecov_top1kGenes.jpg
inst/data/suppl_data/supplementary_text_1.doc
inst/extdata/zhao_data.csv
man/AnnotatePeak2.Rd
man/AnnotatePeak3.Rd
man/AnntationUsingChipSeeker.Rd
man/BamFileSortIndexVisualization.Rd
man/DrawVenn.Rd
man/GetResultsFromDiffBind.Rd
man/GetSampleInfo.Rd
man/IndexBamFile.Rd
man/InstallRequiredPackage.Rd
man/LoadRequiredPackage.Rd
man/ParserBamFile4NgsPlot.Rd
man/ParserBedFile.Rd
man/ParserBedFile4Peng.Rd
man/ParserBedFile4PengVenn.Rd
man/ParserBedFile4PengXls.Rd
man/ParserReadFiles.Rd
man/PeakCallAndAnnotation.Rd
man/ProcessUsingCHIPpeakAnno.Rd
man/getGeneBedName.Rd
man/matchBamInputGene.Rd
man/parser4diffbind.Rd
man/peakcallwithinput.Rd
man/plotBam.Rd
man/plotBam2.Rd
man/reformatPath.Rd
man/runPlotBam2.Rd
man/useBamCompare.Rd
man/useHOMER.Rd
man/usePegasus.Rd
vignettes/tutorial.Rmd
