matchBamInputGene: input.sample.file <-...

In aiminy/ChipSeq: An R Package for Performing ChipSeq Analysis In One Step

Description

input.bam.file <- '/Volumes/Bioinformatics$/2017/DannyNewData/NewRe2Danny/sorted_bam_files_2.txt'

Usage

matchBamInputGene(input.sample.file, input.bam.file, input.gene.list,
  output.dir, ngs.para = c("hg19", 4000, 1, 1, "total"), add.input = NULL)

Details

re <- ChipSeq:::matchBamInputGene(input.sample.file,input.bam.file,'$HOME/all_common_gene_unique.txt','$HOME/NgsConfigFile')

R -e 'libraray(ChipSeq);re <- ChipSeq:::matchBamInputGene('/scratch/projects/bbc/aiminy_project/DannyNewData2/SampleID_INFO_ChIP_new_Danny.csv','/scratch/projects/bbc/aiminy_project/DannyNewData2/sorted_bam_files_2.txt','$HOME/all_common_gene_unique.txt','$HOME/NgsConfigFile',,job.option = 'parallel')'

bsub -P bbc -J 'bamPlot' -o

bsub -P bbc -J "bamPlot" -o

aiminy/ChipSeq documentation built on May 12, 2019, 3:37 a.m.