AnnotatePeak2: AnnotatePeak2

In aiminy/ChipSeq: An R Package for Performing ChipSeq Analysis In One Step

Description

AnnotatePeak2

Usage

AnnotatePeak2(input.file.dir, input.file.pattern, index.file, output.file.dir,
  genome)

Arguments

input.file.dir
input.file.pattern
index.file
output.file.dir
genome

Examples

input.file.dir="/media/H_driver/2016/Danny/Danny_chip_PeakCall/"
input.file.pattern="*macs142_peaks.bed"
output.file.dir="/media/H_driver/2016/Danny/Danny_chip_PeakCall/"

AnnotatePeak(input.file.dir,input.file.pattern,8,output.file.dir,genome="Mm")
AnnotatePeak(input.file.dir,input.file.pattern,7,output.file.dir,genome="Hs")

aiminy/ChipSeq documentation built on May 12, 2019, 3:37 a.m.