Description Usage Arguments Examples
ParserBamFile4NgsPlot
1 2 | ParserBamFile4NgsPlot(dir.name, index, input.file.pattern, out.dir.name,
outfile)
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input.file.pattern |
1 2 3 4 5 6 7 8 9 10 11 12 | sh ~/Code/BashRunMACS1-4-2_4_Danny_chip_seq3.sh /scratch/projects/bbc/aiminy_project/Bam_sorted/ 7 ".sorted.bam$" /scratch/projects/bbc/aiminy_project/Bam_marked_sorted/
dir.name="/scratch/projects/bbc/aiminy_project/Bam_sorted/"
index=7
input.file.pattern=".sorted.bam$"
out.dir.name="/scratch/projects/bbc/aiminy_project/Bam_marked_sorted/"
outfile="test.txt"
re.from.bed.peng.4.venn<-ParserBamFile4NgsPlot(dir.name,index,input.file.pattern,out.dir.name,outfile)
save.image(file=paste0(out.dir.name,"re_save_peng.RData"))
savehistory(file=paste0(out.dir.name,"re_save_peng.Rhistory"))
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