plotBam: R -e...

In aiminy/ChipSeq: An R Package for Performing ChipSeq Analysis In One Step

Description

R -e 'library(ChipSeq);ChipSeq:::plotBam(input.file.dir="/scratch/projects/bbc/Project/Danny_chip2/Alignment/BWA",file.type="*marked.bam",output.file.dir="/scratch/projects/bbc/aiminy_project/DannyNewNgsPlot")' R -e 'library(ChipSeq); x <- ChipSeq:::plotBam(input.file.dir="/scratch/projects/bbc/Project/Danny_chip2/Alignment/BWA",file.type="*marked.bam",output.file.dir="/scratch/projects/bbc/aiminy_project/DannyNewNgsPlot",cores = 8, Memory = 16000,span.ptile = 4,wait = FALSE)' R -e 'library(ChipSeq); x <- ChipSeq:::plotBam(input.file.dir="/scratch/projects/bbc/Project/Danny_chip2/Alignment/BWA",file.type="*marked.bam",output.file.dir="/scratch/projects/bbc/aiminy_project/DannyNewNgsPlot",job.option = "parallel", cores = 32, Memory = 16000,span.ptile = 16,wait = TRUE)'

Usage

plotBam(input.file.dir, file.type, output.file.dir, job.option = "general",
  cores = 15, Memory = 25000, Wall.time = "72:00", span.ptile = 8,
  wait = TRUE)

aiminy/ChipSeq documentation built on May 12, 2019, 3:37 a.m.