PerformSegmentationWithHMM: PerformSegmentationWithHMM()

In akdess/CaSpER: Identify large-scale CNV events from single cell or bulk RNA-Seq data

Description

HMM segmentation applied for each scale of expression signal

Usage

PerformSegmentationWithHMM(object, cnv.scale, removeCentromere = T,
  cytoband)

Arguments

object	casper object
cnv.scale	expression signal scale number
removeCentromere	boolean values determining if centromere regions should be removed from the analysis
cytoband	cytoband information downloaded from UCSC hg19: http://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/cytoBand.txt.gz hg38:http://hgdownload.cse.ucsc.edu/goldenpath/hg38/database/cytoBand.txt.gz

Value

object

akdess/CaSpER documentation built on April 8, 2021, 8:59 a.m.